rs50621282 SNP Detail

Summary

• ID
  rs50621282
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62022139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAGAGAGAG GGAGAATGAC AGAGTCACCA GCCTCTGATC
  CCCTCTGAGT GCCCCAGCCA TACTGCTATA CTACAGGATT CTGAGGATGG CTAGAGCCAG
  R
  GCCAGAAGGC TCACCACCCA GCCCTGTGCC CTGATCAAAG GGGCTCAGTG GAGCCACGAG
  ATAAAGAGCT TTCAGGCCCC AAATTCCATA AACGGGGAGT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61279720	NES16893295	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50621282					SNP	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61279720	NES16893295	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62022139 () rs orientation: forward

Symbol	Name	Function Class
Rr215629	regulatory region 215629	262 bp proximal
Rr219987	regulatory region 219987	1262 bp proximal
Rr228220	regulatory region 228220	within coordinates
Tspan15	tetraspanin 15	within coordinates
Tssr97791	transcription start site region 97791	1126 bp downstream