rs50621591 SNP Detail

Summary

• ID
  rs50621591
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:11366701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTGGTAT TTGTGTATGT
  AGCTCTGTGG CACAGACAGA AACTGGAAGG CTCTTGTCCC AGGCTGTTCC TCAGTTCTTG
  TGTCCTGACA GTTCTGGACA GGTTTCTCTG AGCAGCAGTC ATGGTCCTAC CTGCTCTCAC
  AGGCTTGTCT GCACTCCTGG GAGTCTAGCT CTCTTCCAGA GCCACCTGGT TCTGGAGCCC
  W
  GTGGCAGAGG ACCTGCTCCA GGAACAGACA GAAACCAGAA GCTTCAATTC TTAATAATTA
  AACTGTATAT TTGTTTTTAT TCCTCTTTTT CTAAATATAT CAACTGTTTT GCTTGTTCTC
  TTGGGTTTTA GAGTTGAATA TTCAACCCCA GTTATTCCAA TATTAATTAG TTTTTTATTT
  AGTTTTATTT TATGACATAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147852282	ENSMUSSNP4650129	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50621591					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:11366701 () rs orientation: forward

Symbol	Name	Function Class
5830487K18Rik	RIKEN cDNA 5830487K18 gene	905 bp upstream
Snx29	sorting nexin 29	Intron