rs50622099 SNP Detail

Summary

• ID
  rs50622099
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44149475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGGAGATAG AGATTTGAGG TGCAACCGGA AGGTATCACT
  GAGAAATTGG TGATAGGGCA GGACCAGGAT GCGAGAGAGG TTAAGACAGA AATCTGGTGG
  S
  TGGCCACGGT AAGCATCACA CAGCCCATCC AGTAGTGGGA GTCCACAGCG ATGGTGACAT
  GGACTAGACC ATGACTGAGC CTCCCCTTCT CTCTTCAGG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149113563	ENSMUSSNP3578679	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50622099					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44149475 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18970	CpG island 18970	within coordinates
Garin5a	golgi associated RAB2 interactor 5A	within coordinates
Gm44646	predicted gene 44646	1638 bp upstream
Mybpc2	myosin binding protein C, fast-type	1648 bp downstream
Rr380742	regulatory region 380742	1976 bp downstream
Rr646111	regulatory region 646111	1522 bp proximal
Rr646112	regulatory region 646112	1649 bp proximal
Rr646113	regulatory region 646113	1857 bp proximal