rs50622323 SNP Detail

Summary

• ID
  rs50622323
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:145736324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATTCAGG AAGCTGTCTC
  CTCACAACTG CTCCTATTGC TTCCTCCTAG ATGGAGGAAA CGTGGGAAAC CCCCACCCCA
  AGGAGAGCAG AAAGCAGAAA TAATGAGCTG TGTGTTACCA GCCGAAACCA ACAAAGGGTT
  TTCAAGCACT TACCAGCAAC TGCTGCTGTG AGATACCCCA GCTCATTTGC CAAACGTCAA
  R
  AAGCTGAGCC TTTCCTCGCC TCTCTTGACA GATACTTTGT TCTGACACAC AGGTGACCTT
  GTGCTCATTC TAGCTGCCTC CAGCTCAGAG AGCTCACAGC CATTCCTTCA CCTTTCATGC
  CCAGGAGCCT CTGTGGGTAA CACCACTGCC TATGCTGCCT CCCCCTTTCC TCTCCCCCAC
  TTCCTCCTCC TTCTAACCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61096111	NES16611265	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50622323					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61096111	NES16611265	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145736324 () rs orientation: forward

Symbol	Name	Function Class
Gm40166	predicted gene, 40166	within coordinates
Rr586906	regulatory region 586906	1053 bp distal
Rr586907	regulatory region 586907	within coordinates
Rr586908	regulatory region 586908	124 bp proximal