rs50622516 SNP Detail

Summary

• ID
  rs50622516
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55206818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTCTCC CCCCCAGACT
  CCCCCCACCT CCCGCCCATT CTGAGCATCA TCCTTATCTT GAGGCTCTAC CACCAGTCCT
  CGACCCTCTG TGTGCACAGC CTGGCCACCT TTGAAGCACC TTTATCTCTT GCTCTTTTAG
  GCTCTGGCTC TTAGGTTCCC TGGACTTCTC CACACATCTC CTTCATCCAG TGTGATCCTC
  Y
  CTACGGGTCT CTTCGCTGCA GCTCAGGTCT GATCTAGGAA GAAGAGTGGG CTTAATTGGA
  AGACGGGATG AGGGTATAAA GAGGAGACTT GGGGGACCTG GGCTCTTCTT TCTTTGGCCT
  CCTTATGCCC AGAATCTCTC CCTTTTCTGT TTCCTCTGCT CAAGCTGTGT GTTGGTTTCC
  CATCTCTTCT GACTGCATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52723010	NES15567951	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50622516					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52723010	NES15567951	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55206818 () rs orientation: forward

Symbol	Name	Function Class
Mhrt	myosin heavy chain associated RNA transcript	within coordinates
Myh7	myosin, heavy polypeptide 7, cardiac muscle, beta	1323 bp downstream
Rr407057	regulatory region 407057	1578 bp distal
Rr492380	regulatory region 492380	556 bp distal
Rr492381	regulatory region 492381	300 bp proximal
Tssr125718	transcription start site region 125718	678 bp downstream
Tssr125719	transcription start site region 125719	586 bp downstream
Tssr125720	transcription start site region 125720	561 bp downstream
Tssr125721	transcription start site region 125721	549 bp downstream
Tssr125722	transcription start site region 125722	101 bp downstream
Tssr125723	transcription start site region 125723	59 bp downstream
Tssr125724	transcription start site region 125724	19 bp downstream
Tssr125725	transcription start site region 125725	806 bp upstream
Tssr125726	transcription start site region 125726	831 bp upstream
Tssr125727	transcription start site region 125727	864 bp upstream
Tssr125728	transcription start site region 125728	1672 bp upstream
Tssr128746	transcription start site region 128746	1386 bp upstream
Tssr128747	transcription start site region 128747	1362 bp upstream
Tssr128748	transcription start site region 128748	1318 bp upstream
Tssr128749	transcription start site region 128749	1287 bp upstream
Tssr128750	transcription start site region 128750	1265 bp upstream
Tssr128751	transcription start site region 128751	1259 bp upstream
Tssr128752	transcription start site region 128752	1200 bp upstream
Tssr128753	transcription start site region 128753	1001 bp upstream
Tssr128754	transcription start site region 128754	931 bp upstream
Tssr128755	transcription start site region 128755	1354 bp downstream
Tssr128756	transcription start site region 128756	1371 bp downstream