rs50622814 SNP Detail

Summary

• ID
  rs50622814
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181669238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAA TACCCAAAAG CACGCTAATC
  K
  TAACAGTCCT TACTCACTCC CGCCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146399302	ENSMUSSNP2393409	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50622814					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181669238 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1138	CpG island 1138	within coordinates
Gm55354	predicted gene, 55354	1105 bp upstream
Lbr	lamin B receptor	within coordinates
Rr396678	regulatory region 396678	548 bp upstream
Rr424801	regulatory region 424801	1417 bp distal
Rr424802	regulatory region 424802	1059 bp distal
Rr424803	regulatory region 424803	within coordinates
Rr424804	regulatory region 424804	696 bp proximal
Rr424805	regulatory region 424805	893 bp proximal
Tssr10531	transcription start site region 10531	842 bp upstream
Tssr10532	transcription start site region 10532	878 bp upstream
Tssr15588	transcription start site region 15588	653 bp upstream
Tssr15589	transcription start site region 15589	634 bp downstream
Tssr15590	transcription start site region 15590	661 bp downstream
Tssr15591	transcription start site region 15591	1361 bp downstream