rs50622990 SNP Detail

Summary

• ID
  rs50622990
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44466437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAGAGGAGT TCCAGGCAGC AACCGCGAGA TAACGCTTCC
  CAAGTACTTG TAGAGCGCTG TATACGCGCA CAGATATATC AGCTATGGAA AGTAGGCCAC
  R
  AAGTCCTAAC CACGAGACTC TTCAACATAT TTTTGTTTGT TTTGTTTTAA CATTTATTGT
  GGTGGTCAGA GGAGAGCTAG CAGGAGTTGG TTCTCTGAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss149123053	ENSMUSSNP2117081	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss322199704	CHEV_7_52072383	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50622990					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44466437 () rs orientation: forward

Symbol	Name	Function Class
Atf5	activating transcription factor 5	355 bp upstream
Cpgi18994	CpG island 18994	within coordinates
Il4i1b	interleukin 4 induced 1B	within coordinates
Nup62	nucleoporin 62	within coordinates
Rr400297	regulatory region 400297	940 bp downstream
Rr646219	regulatory region 646219	607 bp distal
Rr646220	regulatory region 646220	450 bp distal
Rr646221	regulatory region 646221	within coordinates
Rr646222	regulatory region 646222	1230 bp proximal
Rr646223	regulatory region 646223	1252 bp proximal
Tssr66426	transcription start site region 66426	1073 bp downstream
Tssr66427	transcription start site region 66427	705 bp downstream
Tssr66428	transcription start site region 66428	679 bp downstream
Tssr66429	transcription start site region 66429	638 bp downstream
Tssr66430	transcription start site region 66430	607 bp downstream
Tssr72230	transcription start site region 72230	1356 bp upstream
Tssr72231	transcription start site region 72231	1331 bp upstream
Tssr72232	transcription start site region 72232	1087 bp upstream
Tssr72233	transcription start site region 72233	405 bp upstream
Tssr72234	transcription start site region 72234	47 bp upstream