rs50626613 SNP Detail

Summary

• ID
  rs50626613
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81015155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAAGTAGAG GACATGATGA AGAAGCTGTG GGGAGACCGG
  TGAGTACATG GCTGTGTGAC TGTCTCTACC CCTGCTACTT GTGGACAATG CCTGCCTGCC
  R
  ATACTATGTG ACTGCTCTCT ACAGGTACTT TGATCCGGCC AATGGCAAGT TCAGTAAGTC
  AGCCAATAGC CCAGATGGGA AAAAACTTCC CCGCACCTTC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52388472	NES15267098	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50626613					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52388472	NES15267098	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81015155 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1950	CpG island 1950	1145 bp distal
Eef2	eukaryotic translation elongation factor 2	within coordinates
Rr435544	regulatory region 435544	1762 bp distal
Rr435545	regulatory region 435545	354 bp proximal
Rr435546	regulatory region 435546	846 bp proximal
Snord37	small nucleolar RNA, C/D box 37	308 bp downstream
Tssr94696	transcription start site region 94696	1584 bp downstream
Tssr94697	transcription start site region 94697	1484 bp downstream
Tssr94698	transcription start site region 94698	1233 bp downstream
Tssr94699	transcription start site region 94699	116 bp downstream
Tssr94700	transcription start site region 94700	13 bp upstream
Tssr94701	transcription start site region 94701	73 bp upstream
Tssr94702	transcription start site region 94702	250 bp upstream
Tssr94703	transcription start site region 94703	313 bp upstream
Tssr94704	transcription start site region 94704	332 bp upstream
Tssr94705	transcription start site region 94705	360 bp upstream
Tssr94706	transcription start site region 94706	552 bp upstream
Tssr94707	transcription start site region 94707	602 bp upstream
Tssr94708	transcription start site region 94708	667 bp upstream
Tssr94709	transcription start site region 94709	921 bp upstream
Tssr98570	transcription start site region 98570	57 bp downstream
Tssr98571	transcription start site region 98571	425 bp downstream