rs50626656 SNP Detail

Summary

• ID
  rs50626656
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:36727031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCCCACC TTCCCCATGC
  CCTAAATAAA CTCCATACCA TGCCTCAGGG GGAGGGGATG CCTCAGCGGG GGCCTGTGGA
  GGCAGCCCTT CCACCTCACC CACCATACAG CGCCTCTACC AACACGGGTG CTGTGCCTGG
  GATTTAGAAA CTCACAGGTT GCATGAGCTC ATATTTCCGT GCTGCCACAT GGACTTTGCA
  R
  CCATGGGATG GATCTCTTGC TAGACCTCTC CACCCAAGCA CTGGAGAATT GGTAAAGCTC
  CCTACTCTCA CTGGTCAGCA TAAACGCCCT CTGGTCCCAA GGGAGGGCTG TTGAGCTTGC
  AGCCACCCCG TGGTGTCCTG GTCTTCTTAC TGATGCTTCG TTCTCGGACC TCTACCCCTG
  GGTGAGTGCT CTCTCTGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147608195	ENSMUSSNP4968674	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50626656					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:36727031 () rs orientation: forward

Symbol	Name	Function Class
A830021M18Rik	RIKEN cDNA A830021M18 gene	within coordinates
Cpgi7034	CpG island 7034	549 bp proximal
Gm41297	predicted gene, 41297	within coordinates
Gm49263	predicted gene, 49263	1551 bp downstream
Tssr131078	transcription start site region 131078	1510 bp downstream
Tssr131079	transcription start site region 131079	462 bp downstream
Tssr131080	transcription start site region 131080	408 bp downstream
Tssr131081	transcription start site region 131081	386 bp downstream
Tssr131082	transcription start site region 131082	91 bp downstream
Tssr131083	transcription start site region 131083	73 bp upstream
Tssr131084	transcription start site region 131084	119 bp upstream