rs50626728 SNP Detail

Summary

• ID
  rs50626728
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52028503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGTGCCC ACCATGCCCA
  GCATACACTT TATTCTTAGA GCAAACCTAG TTGGATCCCA AAGGTTCTAG TATGCCATAC
  TTTCATGTGC GTGGACTCCA GGAAAATGGA ACTTTCCGAT TCTCCAATGA CCACTCAATT
  CAAGAGTATA TTGTTCCATC TCCAAGTATT CATGGAGTTC CTGTAGTTTC TTTTGTTATT
  Y
  ATTTCTAGTT TATTCCACTA TACTTTAATA AGACATAAGA AATTATTTTT ATTCTTTCAT
  ATTTGTTAAA GCTTACTTGG TGGGCCAGAA TGTTATCTAT TCTAGAGGAA GTGAAATCCC
  ATGGGATTGT TTTCTGAAGG GACTCTGGCC CTTGTTGAGC ATGGCTCTGG CAGGCCTTGC
  CCTTCCCTCC CATTTCCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss137728895	ENSMUSSNP1979141	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50626728					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52028503 () rs orientation: forward

Symbol	Name	Function Class
Gm60186	predicted gene, 60186	286 bp downstream
Rr387210	regulatory region 387210	1360 bp downstream
Rr387211	regulatory region 387211	1573 bp upstream