rs50626821 SNP Detail

Summary

• ID
  rs50626821
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:52314306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGCCAGCC TGGTCTACAA AGTGAGTTCC AGGACAGCCA
  GAGCTACACA GAGAAAACCT GTCTCCAAAA ACAAACAAAC AAATGAACGA ACAGTGTTGA
  W
  GTGTCCCTGC CTCCCTAATG GAGGGATGAA AGCCATTACT ACTCTGGATC CACCTCCACA
  TTTTTGAGAA AGGATCTTTC AGTGAAATGG GTGGGAGCT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52719797	NES15554427	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	T	A	A		T	A	A		A
ss139500726	ENSMUSSNP1117225	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A
ss324627156	CHEV_14_52696524	CHEVERUD	SCREENING_POP	f	SNP											A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50626821					SNP	A	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52719797	NES15554427	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52314306 () rs orientation: forward

Symbol	Name	Function Class
Hnrnpc	heterogeneous nuclear ribonucleoprotein C	within coordinates
Tssr128488	transcription start site region 128488	1181 bp downstream