rs50627035 SNP Detail

Summary

• ID
  rs50627035
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:126420816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGCCAAGG TGGGCGCAAC
  ATTTTGGTGG CCCGTACGGG GACCCGAGGA TCTCATGGAT TCAGAACTCT TCAGCTGAGG
  AATGGCAGTA TCGGTAAGTC TCCCAAATTG ATCCCTGGGC TTAAGGGGGA TATGTTTTTC
  TCGCCCATAG ACCCAGTGTG GGTAGCTCTT GCCATTGTTG TTTTGTTTTT TTGTAAAACC
  Y
  GGCATGAAAC CGCTTTGGCG CATGGTACAA GCTTGTTTAG AAGATAAGCG GTATGTCAAA
  GCAGTAAAGA CAAGTCAGAA AATTCTTACA GAACAACAAG AAAGTATGTC AGAGGAAGAT
  AAGGAACGAA TGAGCAGAAA AAGGGTGAAA GGGGTGAGAA AGAACAAGGA AAAGAAAAAG
  GAGGAAAAAT AAAAGTAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61329141	NES16940178	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50627035					SNP	C	T	C	T	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61329141	NES16940178	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:126420816 () rs orientation: forward

Symbol	Name	Function Class
Gm47965	predicted gene, 47965	1743 bp downstream