rs50627142 SNP Detail

Summary

• ID
  rs50627142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:21284852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGGCACTA AGACATGCCT
  AGCCACCTCA CACGTGTCCA TGTTCTCTTA GGCTTCAGTC ACATGCTCTT TTGGCTGTCT
  ATGTGTTACG GCCTGGCTCA AGCCCTTCCT GTTGGGTCGC CTATTGTACT GCTCAATCCC
  CTTCTCACAG TCCTGTGAAA GGGTAGCTAA CAGTTCCTTT ACACATTCTT TTATAGAATG
  Y
  AGATTTACCA TGGAGTGATT GCACAGACAG GGCCCTAATC CTGGACTCCA ATTTGGCCAT
  TTACAAGGTG ACTTCTGTGA GATGCTTGCC ATCATTCTTT CTTAGTTCCT GCATCTGCAG
  AATGAATTTA ATAATAGGCT TATAGACATG ATAAGGCAAT GCATACAGTA ATGGACAATA
  CAATACATAA TAACGATAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146346649	ENSMUSSNP7171225	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50627142					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:21284852 () rs orientation: forward

Symbol	Name	Function Class
Gm54105	predicted gene, 54105	within coordinates
Rr552698	regulatory region 552698	653 bp proximal
Rr552699	regulatory region 552699	941 bp proximal