rs50627403 SNP Detail

Summary

• ID
  rs50627403
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53601945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGTGGCCCC CTGGTGATCA CCTGTGTCTC CTGCAGCTCT
  GTATGAAAGC TCCTCCTAAT ATGCCTACCA GCACACCTAG CAGCCTTCAT TACTCCACTT
  T
  GCGGAGTGCC CCCCACCCCC ACCCCCACCC TGGGGCCTGC CCCGATGTCC TGACATACAA
  CAGATAAGCC TTTCCACACT GGGTACTCCC TGCAATTGT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss149016979	ENSMUSSNP2936526	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50627403					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53601945 () rs orientation: forward

Symbol	Name	Function Class
Gm2762	predicted gene 2762	within coordinates
Rr480048	regulatory region 480048	within coordinates
Tssr119835	transcription start site region 119835	342 bp upstream