rs50627730 SNP Detail

Summary

• ID
  rs50627730
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102286139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTACTCTGA TCCCAAAGTG
  ATTCCATGAC TCCAATGTTG GCCAATACTA CTGACCTTGC CCAGCTTTCT AACTCGCAGC
  TACAATTCCA TTGTTTGTGC TGTTATGAGC TGGGTGGCTG TGTTCCCTCC AGGCTTAAGT
  ATTGAATTCT CAACCCTAAT GCCACTGTAT TAGCTGCAGG GCCCTCTGGA AAGTGACTGG
  M
  TCATAAAAGT CATGATCTCC TCGTGAATAG GATTAATGTC TTTGTAAAAG AGACTCCACA
  TCTCGTGCTC TTTTGGTCAT ACAAAGACCC AGGCAGAAAA TTACTGGGTA TGAACCTGTA
  GGAGCGCCTT CAGAAGACAC GAACTCTCGT GCGCCGTGCT CTTGGGCTCC TCAGGGTTCA
  GAACTGTGAT GAATATGATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147112395	ENSMUSSNP3736643	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	A
ss320437780	CHEV_2_102295951	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50627730					SNP	A	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102286139 () rs orientation: forward

Symbol	Name	Function Class
Rr561697	regulatory region 561697	1956 bp distal