rs50627844 SNP Detail

Summary

• ID
  rs50627844
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70989172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTAATGAG GTTGCCTTCT
  GTCTCCTCCT GTGACAGTCA AAGTGGAGAA AGCTTCAATG TGAAAGAAAG GAGAGGGGGG
  AAGATGCTGG AGTGGGGACT ACGTTGCTTA TAATAGATTT GGTGTATACA TTAATGATGT
  CAATATATAG AGTGATCTGG AGTCTTCCTA CACCCAGATA TCTCACTCCC CCAATGTAAC
  K
  CTGGCTAGCC ATTATCATTT TACTAGGAAA TAGGATACAG ACGTTGGTCG GAAGTCATTC
  TTGAGCATGA TCTTGTGCTC GAAATGAATA GAAAGAGCAA GATAGCATCT TCAAAGCTTT
  TGGCGTCCTG AGTCCCAGGA GACTTGCAGA CCAGCATAGG GGGTTGCTGG CTGCTTACCT
  GTGAGGAACC GAGAGCCCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52651868	NES15472152	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50627844					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52651868	NES15472152	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70989172 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	within coordinates
Cpgi5821	CpG island 5821	184 bp proximal
Gm36529	predicted gene, 36529	within coordinates
Tssr123158	transcription start site region 123158	650 bp downstream
Tssr123159	transcription start site region 123159	676 bp downstream
Tssr123160	transcription start site region 123160	709 bp downstream
Tssr123161	transcription start site region 123161	737 bp downstream