rs50628957 SNP Detail

Summary

• ID
  rs50628957
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:32629690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAAAAAC TACCTCTTCC
  AGCCTAAATA AACCGGCTTT GCTCCATTTG TTTGCCCAGA TTTTTCCTTT GCCCATGGAG
  AAAACGTTTC ATCTTCTACC TCTCCTGGCT TCGCTTTCCT GGGGGAGGGG ATCCCTAGCC
  CCCCTTCTTC ATGCTTGCTG TAGGCTCTGA GCCAGTAGTG GGAGCAGGTC ACTTTTGGGG
  R
  GGGCGTGCAG TGGTGCGGTG ACATGGGGGA ACCTGGAGCC ACATGCTGCA GCTGCTGTGT
  ACTATCTCTG GGACCAAGAT CTACTTTTCT CCAGAAAGAA CTTCCTTCAC AATTACATTT
  GGAAAGAAAC ATCCTACATC CATGTCTGTT TACAAACAGA CCCAGAGGGG GAATACCTAC
  CTTTTGTGTC CAGATCTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136250197	ENSMUSSNP3228640	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50628957					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:32629690 () rs orientation: forward

Symbol	Name	Function Class
Ets1	E26 avian leukemia oncogene 1, 5' domain	Intron
Rr368708	regulatory region 368708	946 bp downstream
Rr676236	regulatory region 676236	1862 bp distal
Rr676237	regulatory region 676237	within coordinates
Rr676238	regulatory region 676238	1242 bp proximal
Tssr84287	transcription start site region 84287	1633 bp downstream
Tssr88694	transcription start site region 88694	281 bp upstream