rs50629843 SNP Detail

Summary

• ID
  rs50629843
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:45607739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGATTTATT GTTATGTGAA
  CGAGGATTTG AAGCAAGAGC CAGGAAATCA ATTTCAAAGA CGACAGCAGC TGCTGTGTCT
  TTTATTGTTC TAGGAGGTAA TTCCATGTTT TTGTACCAAG TGGGTCTATT TTAAACTGAG
  AAAGCACTAC AGAACCTGTA CCTTGACAAG GGATCCTAAG ATTTAGAAGC TGAAACAGGT
  R
  TGAAAGGTTT TTCTAGCCAA GCTTATTTCC CAAGTGAATT TAAGGTAACA CAGAACAGCT
  TCATATTATT ACTTAGCATA GCAAGACATC AGGGATACAG CAACTGTCTT GAGTACACAC
  GTAGTCCCAT CTTCCACAAA CCGTCTTCCA AGACCTTGCC AGATTTATGC CCAGAGAAAA
  ATACACAAGT CAAAAAGGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52410591	NES15387129	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50629843					SNP	A	A	A	G	A	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52410591	NES15387129	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:45607739 () rs orientation: forward

Symbol	Name	Function Class
Rr267454	regulatory region 267454	within coordinates