rs50629923 SNP Detail

Summary

• ID
  rs50629923
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86347713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAA AACATAGCTT GTATAATGGG
  R
  ATTGTCTTAG TTAAGGTTGC TTTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136756063	ENSMUSSNP5592591	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss323056337	CHEV_9_86359267	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50629923					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86347713 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22101	CpG island 22101	543 bp distal
Cpgi22102	CpG island 22102	1257 bp proximal
Dop1a	DOP1 leucine zipper like protein A	1481 bp upstream
Rr684095	regulatory region 684095	721 bp distal
Rr684096	regulatory region 684096	220 bp distal
Rr684097	regulatory region 684097	681 bp distal
Rr684098	regulatory region 684098	1004 bp proximal
Rr684099	regulatory region 684099	1421 bp proximal
Rr684100	regulatory region 684100	1505 bp proximal
Tssr86391	transcription start site region 86391	1503 bp upstream
Tssr86392	transcription start site region 86392	1513 bp upstream
Tssr86393	transcription start site region 86393	1564 bp upstream
Tssr90780	transcription start site region 90780	717 bp upstream
Tssr90781	transcription start site region 90781	702 bp upstream
Ube3d	ubiquitin protein ligase E3D	710 bp upstream