rs50630097 SNP Detail

Summary

• ID
  rs50630097
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:20514081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCGAAGGG CCTGGAGGAC
  GATGGACTTG TCAGACAAGT CGCAGAGGTG AGAGCAGAGA TCATGGATGT GATCTGGGAA
  GCGATGGGAA ACTGAGCAAA AAGGAACACC AGGTGTGGAG AGGAAACTCT CTCTGGTTTA
  GATATTGGGA AGCAGACTGA AAGGGAGAGA CTCGGGTTGG GGCCATTAGG TAATGACTTA
  M
  AAGGGTGAAA CTTAGAAAAA TCATGGGTTT GTTGGGAGTG ATAGCCCAGT TGAGATTGGT
  GAGAGGAAAG AATCCTGGGG AGAAGGAGAG TGAGAGGGGG CCAGTGCTGG TGGGCAAATT
  TCATGCACTT TTCAAGGGTT GAGATGCGGG CGGAGAGGTC AGGGGTTACT CATATTTGGG
  TATGAGTAAC GTAAGTTCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60198409	NES15711487	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50630097					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60198409	NES15711487	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:20514081 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8083	CpG island 8083	1575 bp distal
Cpgi8084	CpG island 8084	324 bp proximal
Fam131a	family with sequence similarity 131, member A	within coordinates
Tssr137488	transcription start site region 137488	1984 bp downstream
Tssr137489	transcription start site region 137489	322 bp downstream
Tssr137490	transcription start site region 137490	302 bp downstream
Tssr137491	transcription start site region 137491	240 bp downstream
Tssr137492	transcription start site region 137492	848 bp upstream