rs50630278 SNP Detail

Summary

• ID
  rs50630278
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:6184537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAAGAAA CTGAGGTCAC
  AGGATTCTTG TTTTGTTTTC TTGGAGTGTT CTCACAAGCA CTGGGACTTC TTCTCCCACA
  GGTTCATTCC TGGACTGTCT TCCGACCCAC CTGTTTCTCC ATCCTCATCC TTGCTTTTGT
  GGCTAACTTG TTTATGTCTC TGATCTGTAC CTTTCTGGAA GCTTGGATTC AAGCGCTCTT
  M
  GATACTTGAC AGACCAGATG GAACGCACTT CACAAACTGT TTGAGCCCCC AGCCCATTCT
  TGTTTCTTCT GGTTACTGCT TCACCTTCCT GGGAATTACT TGCAGTAATG GAACTAGCTG
  GGAACTTCCT AAGTGCTGAA TGTTGCCTGG AGAGTTAGCA GGAACTGGAC TGGGAGCAGA
  GCTTAGTGCT GGTTCTTACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60525289	NES16542702	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50630278					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60525289	NES16542702	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:6184537 () rs orientation: forward

Symbol	Name	Function Class
Gm15590	predicted gene 15590	1857 bp upstream
Gm66616	predicted gene, 66616	1649 bp downstream
Rr521311	regulatory region 521311	1650 bp distal
Tulp4	TUB like protein 4	within coordinates