rs50630792 SNP Detail

Summary

• ID
  rs50630792
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124138140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCTGCAG GGCATTCTGC
  AGTTGGGCCA GGTGAGATAT GTAACCGAGG CCCTGAGCGC GGGCGGGCCG AGGGAATGCT
  GACTTGTCGG TCCTTTCCCT GAGGGAGGCT AAGCAGGTGT GCGCACTCAC AGGCTGCAGC
  TTCAGTACAT AGGGCCGAAC CTGCACACAC TACCACCTTT GCCACCCTCG TCTGCTGCCT
  Y
  TTGTACGTCT TTCCCTGGGC CTTGATGAGG TTGAGTCTAC ATGGCTGACT CGATCGTTTC
  AGGACTTGAA GCCTAAGAGC CTGGATGTAC GGCAAGAGGA GCTAGGGGCC ATGGTGGACA
  AGGAGATGGC GGCCACCTCG GCAGCCATTG AGGACGCTGT GCGGAGGATC GAGGTGAGGG
  CTGAGCTCCT GTGGGAACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60835822	NES16016994	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50630792					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60835822	NES16016994	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124138140 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16597	CpG island 16597	1935 bp distal
Hip1r	huntingtin interacting protein 1 related	within coordinates
Tssr48831	transcription start site region 48831	1357 bp downstream