rs50631501 SNP Detail

Summary

• ID
  rs50631501
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:91986948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tagtaagga agctgcctgg tgtttctggt
  gtgccaagac agatctctaa ttaggtatgg ttgctcaatg tatttaactt ttctgtatca
  atcaagaGGC AGAGAAACTC GTCCTTTCAC CTCAACTTTG GTGAAATTCT TTTTCTCAAC
  M
  GCAGCCAATA TTGTTTCCCT CAGGAAAAAG ACCTGGTCAA GTTGGACAAG TTTTGAGAAA
  GAGAAAAACA GCCAAAGGCT AGAGACAGTA AGTAGTTAGT GAGATCTGAA ACCCTTTCTA
  CTCTGGAGTC AAAACTTGGA GACTCTTCTC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60764382	NES16407869	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A		C	A	A	C		C
ss319842244	CHEV_1_93955803	CHEVERUD	SCREENING_POP	f	SNP										A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50631501					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60764382	NES16407869	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91986948 () rs orientation: forward

Symbol	Name	Function Class
Hdac4	histone deacetylase 4	within coordinates
Rr18400	regulatory region 18400	1453 bp proximal
Rr23700	regulatory region 23700	within coordinates
Rr35319	regulatory region 35319	854 bp proximal
Rr366965	regulatory region 366965	287 bp downstream
Tssr8116	transcription start site region 8116	278 bp downstream
Tssr8117	transcription start site region 8117	249 bp downstream