rs50631519 SNP Detail

Summary

• ID
  rs50631519
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137444962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CCTCGCCCTC AGCCGTCGCC TGCAGGGCAC TCCGTTTCCC
  AGGAGCTTGG GGACTGCTCA TGGCCACTCT GGGAGGAAGT AGGGCTGAGG GAGGGCCACT
  Y
  GGGAGCTGCC ACCGTGTGAC CTTGCCCCCG TGTGGTCTCC AGACCTCTGA GGAAGAACTA
  TTCAGTACCA ACGAGGAAAG TCCTGCCTTC GTGGAATTCC T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss147617643	ENSMUSSNP6017679	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50631519					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137444962 () rs orientation: forward

Symbol	Name	Function Class
Rap1gap	Rap1 GTPase-activating protein	within coordinates
Rr86556	regulatory region 86556	1839 bp proximal
Rr96794	regulatory region 96794	1739 bp distal
Rr100343	regulatory region 100343	1638 bp proximal
Tssr39776	transcription start site region 39776	296 bp downstream
Tssr39777	transcription start site region 39777	270 bp downstream
Tssr39778	transcription start site region 39778	1563 bp upstream
Tssr39779	transcription start site region 39779	1593 bp upstream
Tssr39780	transcription start site region 39780	1869 bp upstream