rs50634401 SNP Detail

Summary

• ID
  rs50634401
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136514282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cccatctgt aactccagtt ccagggaatc
  cagtggcctc taccagcacc agacatgcat gtggtgtgca gacacccatg tagacaaaat
  agaaatccac ataaaagaaG TTAAGTCAAT TAAATTGgga aagcaattga gagagatgtt
  R
  acctctgtcc tccatgcata catacacaGT GCATCAGtaa ataaataaat aaataaataa
  ataTTGATTA GCAACTGTAG ATACAAGATC AAATTTTCTT CTAGATGCGT ATTTCACCTT
  TAACTTtaaa aaataattag acagtcaggg                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
ss145559090	ENSMUSSNP5374136	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss319996212	CHEV_1_138483121	CHEVERUD	SCREENING_POP	f	SNP			G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
rs50634401					SNP	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136514282 () rs orientation: forward

Symbol	Name	Function Class
4933409D19Rik	RIKEN cDNA 4933409D19 gene	within coordinates
Gm57131	predicted gene, 57131	within coordinates
Rr419475	regulatory region 419475	1261 bp proximal