rs50634579 SNP Detail

Summary

• ID
  rs50634579
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77501292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATCTTTT CTAAAGGAGC
  ACAAACCTAA TCCAGGGCTC ACAGGAGCCT CACAGGCAGA GGCTTAGACA CTGGTCTATA
  ATCCAAGTCT CTGCAACATT CAAAACACAC ACACACACAC ACACACACAC ACACACACAC
  ACACACACAC ACACACACTA GCATGGCAGA ATGTATGAAT GTCTGGGAAT TTCAGGTCAG
  K
  CAGGTATCTA CTGAATAGTC TAAAATGACT AAGCACATAA AACAATAAAA ATTAGGAAAA
  ACAGAACTGC AGAAAATAGC CCAATACAAT GCTGATAAAT GAAATACGCA TTTGTGGACA
  CTCAACAGGT ATATAAGGAA GAACAAAGTG AGTATTAGCT AACTAAAAGA TTATTCAGGG
  ACCAAGATGG AAAGGATGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61429596	NES16809135	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50634579					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61429596	NES16809135	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77501292 () rs orientation: forward

Symbol	Name	Function Class
D9Dcr14	DNA segment, Chr 9, Derry C. Roopenian 14	19 bp distal
Rr368830	regulatory region 368830	1296 bp downstream
Rr683375	regulatory region 683375	1188 bp distal
Rr683376	regulatory region 683376	964 bp proximal