rs50636189 SNP Detail

Summary

• ID
  rs50636189
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:19433290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTCACAG CAGGGCAGAG
  GAAAGAGGTG GAGTTTGGAT GCCTTGTGAC CCCCCGCTCC CCTCCCCCGC CAACAAAGGG
  AGCGGACACC TCATTGAATA ATCCAGGCCT TGGTACTGGG GCACTGAGAA CCGCTCCTTC
  CCTTTCCCCG CGGGGTCTGG TGCATTGTAA AGAAAAGAGC TGGCAGCCTA AATGGAAATG
  R
  GTGGGTGGGG GCTAAGAGGC TCAGCTTCTG GGGTGAAGAT CGTTGTTCTG GGATCCCTCG
  TTGTTGATTC CTCCACCACA GGTGAACTCT TTCCATTCCA AGGCTGGGAC GTGCTCCAGT
  TCCTTCAGGA GCTGTTCAGT GGTGGCTCCC GATGGGTTTG AAGCCATACA TTAAGCCAAG
  CCCTGGGAAA CCAAGCGTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148481724	ENSMUSSNP954501	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50636189					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19433290 () rs orientation: forward

Symbol	Name	Function Class
Apoe	apolipoprotein E	mRNA-UTR
Cpgi18508	CpG island 18508	564 bp distal
D7Mit57	DNA segment, Chr 7, Massachusetts Institute of Technology 57	1446 bp distal
Gm71725	predicted gene, 71725	within coordinates
Rr643242	regulatory region 643242	468 bp distal
Rr643243	regulatory region 643243	1069 bp distal
Rr643244	regulatory region 643244	within coordinates
Rr643245	regulatory region 643245	965 bp proximal
Rr643246	regulatory region 643246	1891 bp proximal
Tomm40	translocase of outer mitochondrial membrane 40	1948 bp downstream
Tssr2122	transcription start site region 2122	1700 bp upstream
Tssr64894	transcription start site region 64894	1867 bp downstream
Tssr64895	transcription start site region 64895	1788 bp downstream
Tssr64896	transcription start site region 64896	1764 bp downstream
Tssr64897	transcription start site region 64897	1944 bp upstream
Tssr71000	transcription start site region 71000	1843 bp upstream
Tssr71001	transcription start site region 71001	1777 bp upstream
Tssr71002	transcription start site region 71002	1758 bp upstream
Tssr71003	transcription start site region 71003	1730 bp upstream
Tssr71004	transcription start site region 71004	1712 bp upstream
Tssr71005	transcription start site region 71005	1367 bp upstream
Tssr71006	transcription start site region 71006	1334 bp upstream
Tssr71007	transcription start site region 71007	1272 bp upstream
Tssr71008	transcription start site region 71008	1166 bp upstream
Tssr71009	transcription start site region 71009	1104 bp upstream
Tssr71010	transcription start site region 71010	984 bp upstream
Tssr71011	transcription start site region 71011	960 bp upstream
Tssr71012	transcription start site region 71012	930 bp upstream
Tssr71013	transcription start site region 71013	302 bp upstream
Tssr71014	transcription start site region 71014	229 bp downstream
Tssr71015	transcription start site region 71015	354 bp downstream
Tssr71016	transcription start site region 71016	590 bp downstream
Tssr71017	transcription start site region 71017	1039 bp downstream
Tssr71018	transcription start site region 71018	1080 bp downstream