rs50637750 SNP Detail

Summary

• ID
  rs50637750
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:105072981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTCGTCC AGAATGTTTA
  ATGAGCCCCA TGACTGCTCT TCTTTTCTTA GTAGCTGAAA ACTGTCCCCG TCACTAGTAT
  GGAAATGGGA TCTTAAAGGC CACCAAGGGG CATCTTTCTC TCTGCATCAG TAGACAATCA
  TGTCCTTGTT TCTCTTTGCC TTTTATATCA GTGTTCACTG CTCATCAGCT AGAATTTTTA
  Y
  ACCCTGTAAC TGTCTTTGAT GTTTCTGTTA TCCCACAGTT AGATGGAATT CCCAGGGTTA
  GAACTTGGCA CTCTCCTCTC CTTTCTGATC TTCTCTTCCT TGGTACTTTT TACTCATTTT
  TCTGGTCCTG TCACTTGTGG CAGATGACTT TTACATCTTC ATCCTTTCTC TAGAGCACTT
  CCTGAAAGGA AGTTCTACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss147491270	ENSMUSSNP4557708	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T		T
ss323446494	CHEV_10_104674176	CHEVERUD	SCREENING_POP	f	SNP				T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs50637750					SNP	C	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:105072981 () rs orientation: forward

Symbol	Name	Function Class
Tmtc2	transmembrane and tetratricopeptide repeat containing 2	within coordinates
Tssr95614	transcription start site region 95614	1003 bp upstream
Tssr95615	transcription start site region 95615	1368 bp upstream