rs50640171 SNP Detail

Summary

• ID
  rs50640171
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69912875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGTTGCCAGG CAACGGGGAA ACGGAAAATG GAGGGAAAAA
  GGAAATGAGG GATGAAAGAG GGTCTTGATA GTCCATAGTG CCTACTGGTG GAGAAGCAGG
  K
  CCTATGTATT TTCTAGACTA AAAAAAAAAA AAAAAAAAAA AAAATGAGTT CAAGTCCGTT
  CTGCATTGGT TCTTTCTGAG GATCCATGCA TTTTATTTA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132364035	ENSMUSSNP7181909	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss323732622	CHEV_11_69835551	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50640171					SNP	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69912875 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3168	CpG island 3168	188 bp distal
Cpgi3169	CpG island 3169	1802 bp proximal
Dlg4	discs large MAGUK scaffold protein 4	within coordinates
Rr402685	regulatory region 402685	954 bp downstream
Rr402686	regulatory region 402686	587 bp downstream
Rr450198	regulatory region 450198	1062 bp distal
Rr450199	regulatory region 450199	627 bp distal
Rr450200	regulatory region 450200	5 bp distal
Rr450201	regulatory region 450201	1476 bp proximal
Tssr102634	transcription start site region 102634	1873 bp upstream