rs50640833 SNP Detail

Summary

• ID
  rs50640833
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90184942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AAAAACAAAA AAACAAAAAC AAAAACAAAA AACAAACAAA
  CAAAAAAAAC CCAGCATTCA GTATGAACTC ACATTAGCTC TTCAAAGGAG AAACTCTTTA
  R
  ACCCGTCCTA GTTGTTCTCA GTGGAGTAAG GGAATATTTA TTTACTTTTT GGTGCGCAGT
  GGGCTGTCTG CCGGACACAC ATCAGTGATG CAGACTGATT T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148529285	ENSMUSSNP5522389	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50640833					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90184942 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8424	CpG island 8424	857 bp distal
Hunk	hormonally upregulated Neu-associated kinase	within coordinates
Rr519121	regulatory region 519121	1539 bp distal
Rr519122	regulatory region 519122	1082 bp distal
Tssr139291	transcription start site region 139291	1600 bp downstream