rs50641544 SNP Detail

Summary

• ID
  rs50641544
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59524764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAAAAAG ACCCAGAAGA
  AAGGTCCCCA GAAGGCCCTG TAGTCATTGG CTGGCTCCTG GACTGTGGTG TTCTTGCCTC
  CTGGTCACCC TGTCAGTGTC TGGATCTCAC AGGAGCCACC TGCACTTAGG TCTTAGGCTT
  ATGCTGGGGA AACTGCTGTA GGGACAAGTC CTACCAAGAA ACCAGGTGCA CCCTATTCTA
  R
  TCTGTAGTCT CTCTTGGCTA CCAGACACCA GCAACTTACA CAAAACTTAC ATAAGCCTGG
  GACCCCAAGC AAGAGCCCTT TGCTAGTATG TGGAAGAAAT GGCTGCATAA ATGGCCAGAG
  GAATTGGGTT ATAGTCCTCC TAGAGACAGC CAGGGAGCCC TAACGTGGAT CCTCAAAGCC
  TTACATGCTA GGCAGCCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132238161	ENSMUSSNP471826	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50641544					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59524764 () rs orientation: forward

Symbol	Name	Function Class
A630028G03Rik	RIKEN cDNA A630028G03 gene	within coordinates
Gm33998	predicted gene, 33998	1841 bp downstream
Rr448217	regulatory region 448217	444 bp distal
Rr448218	regulatory region 448218	700 bp distal
Tssr101856	transcription start site region 101856	256 bp upstream