rs50642215 SNP Detail

Summary

• ID
  rs50642215
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86761809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTG GTCCATCGAG GTCCAGGGCT
  R
  TCAGCCACCC GCAGGGTAGT CCTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136762469	ENSMUSSNP1347601	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50642215					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86761809 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22106	CpG island 22106	within coordinates
Rr684153	regulatory region 684153	within coordinates
Rr684154	regulatory region 684154	648 bp proximal
Snap91	synaptosomal-associated protein 91	within coordinates
Tssr90794	transcription start site region 90794	609 bp downstream
Tssr90795	transcription start site region 90795	647 bp downstream
Tssr90796	transcription start site region 90796	658 bp downstream
Tssr90797	transcription start site region 90797	725 bp downstream
Tssr90798	transcription start site region 90798	735 bp downstream
Tssr90799	transcription start site region 90799	891 bp downstream
Tssr90800	transcription start site region 90800	942 bp downstream