rs50642465 SNP Detail

Summary

• ID
  rs50642465
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:57168234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACAGAGA GCAGTAGAGA
  TGAGCAAGGA GGCCAACAGC CTGTCCGTGA GCCAGTTCCA GCTGGCTCCT GCCATCTTTC
  AAAGAGAAGA TGCTCAACCT GGTGTCCACA CTGCAGCAAC TGATCGGCCA GCTCACTAGT
  CTTCGAATAC AGCTCCTGTT TATGATTCTG ACCTCTCCAA GATATGTGAA CCGGAGTGAC
  W
  GAGTTCCTCC AGCAGAAGTT GAAAGCAGTC ACAGCTGTTG GCTTTGAAGA AGGAACTGAT
  GCCGGAGGCG CAGCAGGAGG CACTTCACGA GCAGGCAGCT CTGGAGCCCA AGTTGGAACA
  GCTGCGCTGG AGACCAGAGA GCTGCAGAGA TTGAAGCTGA CATCTTCAAG AGGTACAACC
  GTGGTCTTGT GAAGCTGATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss52318208	NES15288256	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		A	T	T	A
ss323316481	CHEV_10_57011944	CHEVERUD	SCREENING_POP	f	SNP										A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs50642465					SNP	T	T	T	T	T	T	T	T	T	A	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52318208	NES15288256	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:57168234 () rs orientation: forward

Symbol	Name	Function Class
Gm7001	predicted gene 7001	within coordinates
Gm66529	predicted gene, 66529	264 bp upstream