rs50642847 SNP Detail

Summary

• ID
  rs50642847
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45578188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTG CCCATACTAT CTAGCAGGGC
  W
  GCAAGCAGGT CTCTGTATGC CTACA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148351383	ENSMUSSNP1455863	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321526932	CHEV_5_45812085	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50642847					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45578188 () rs orientation: forward

Symbol	Name	Function Class
D5Ertd615e	DNA segment, Chr 5, ERATO Doi 615, expressed	within coordinates
Gm71490	predicted gene, 71490	within coordinates
Rr611049	regulatory region 611049	519 bp distal
Rr611050	regulatory region 611050	862 bp distal
Rr611051	regulatory region 611051	586 bp distal
Rr611052	regulatory region 611052	209 bp distal