rs50642872 SNP Detail

Summary

• ID
  rs50642872
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185321116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGAACAT GTAAACCATG
  GTTCCTGGTG GTCACAGATC CTTCTCAGGG AATTTGCCCC AACACAGATC TTGCCAGGAG
  GACAAGGATG GGCCTCACTG TATCCTTTCA TCTCCCAGGA AAAGTTGGAT AAAAGCCAGG
  GAAGACCAAA CCCCAAGGCT TTCCCTAAGC AACTGAGATA TTCTGGACAA TCAGAAAAGA
  K
  CTGGCAACAA CAGAATTAAA AACCCAAAGT AGACATGATA AAGAGTCGAG TGAGGTTCCT
  TTAAATAGTA TAGACAAGGG AGAGCCCCTT CTATGAGGAG GTATGTTTGA TTGACAGGGA
  GGAGCCCCTC TTGCAGCTAG CTATGGGCAT TCCAGGTAGA CTAGTCATGA GGACACTTGT
  GAGGGACAAG TGAGACAGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss146437040	ENSMUSSNP4984462	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss320177574	CHEV_1_187412798	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50642872					SNP	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185321116 () rs orientation: forward

Symbol	Name	Function Class
Rr425415	regulatory region 425415	202 bp distal