rs50643033 SNP Detail

Summary

• ID
  rs50643033
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84441048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGAAGAA GGTTTCATAG
  GGGCAGAATG GGGGTTAGCT GTTTTCCTTA GACAAGGTCT TTTTCTATCA CCAGATATCT
  GGGGTCAGGC AGCTGCTTTT CTTCTGCAAT CCCCAAAGAG CTGGCTTTCT GGAACTATGA
  GCTCAGTTTA CGGCCTGGGA TTTTTGTTTT GGTGGTGGTA CAATGTAGGG GTAAGAAAAA
  Y
  AAGGGCTGGA GAGATGGCTC AGCGGTTAAG AACGCTGACT GTTCTTTCAC AGGTCCTGAG
  TTCAAATCCC AGCAACCACA TCATGACTCA ACCATCTGTA ATGAGATCTG ACGCCCTCTT
  CTGGTGCTGT CTGAACAGCT ACAGTGTACT AAGATGTAAT AATAAATAAA TCTTGCCAGG
  CCTGGTGGTG TACGCCTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145360616	ENSMUSSNP6538644	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50643033					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84441048 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20654	CpG island 20654	491 bp proximal
Ddx39a	DEAD box helicase 39a	758 bp upstream
Rr382392	regulatory region 382392	312 bp downstream
Rr401010	regulatory region 401010	555 bp upstream
Rr666291	regulatory region 666291	108 bp proximal
Rr666292	regulatory region 666292	268 bp proximal
Rr666293	regulatory region 666293	1140 bp proximal
Tssr78284	transcription start site region 78284	772 bp upstream
Tssr78285	transcription start site region 78285	808 bp upstream
Tssr78286	transcription start site region 78286	820 bp upstream
Tssr78287	transcription start site region 78287	886 bp upstream
Tssr78288	transcription start site region 78288	1085 bp upstream