rs50643994 SNP Detail

Summary

• ID
  rs50643994
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:63216429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACACACAC
  ACACCAGGGA TTTGGGCATC TTATGCTAGG ACTATACATT GAATTGAAAC CCAGTTGCAG
  TGTAGCCAGA CTTCTATACC TAGAGCATTT TCAAATCTGA GAATCATTCT GGTCCACTAC
  CCTCCTTCAT AAATCAAAGA AGCACGAGTT TTAAGGAATC AGTGAAGCCG TGGATTTGAT
  Y
  CCTAGCATCA CATAAACTAC ACACTGGTTT GCTTGATAGT AGGGATTACA TTACGTGATT
  ACACCTGTAA TCCCAGCACT CAGGAGGTCG AGGCAAGATT AAGCATTCAA GGCCCTCCTT
  GACTCTGTGC TGAGGCAGTT TAGGATAAGT AGGACTGTAC CTAAAAAGGA AGAGATGGCC
  AGCACTTAAA AGCACGAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52347185	NES15278340	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		T	C	T	T		C
ss323333502	CHEV_10_62843398	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50643994					SNP	C	C	C	C	C	C	C	C	C	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52347185	NES15278340	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:63216429 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1649	CpG island 1649	841 bp proximal
Cpgi1650	CpG island 1650	1682 bp proximal
Dnajc12	DnaJ heat shock protein family (Hsp40) member C12	1793 bp upstream
Gm66647	predicted gene, 66647	1207 bp downstream
Rr224928	regulatory region 224928	771 bp proximal
Rr369009	regulatory region 369009	1419 bp upstream