rs50644597 SNP Detail

Summary

• ID
  rs50644597
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79748829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAT TAAAACAAGC AAAGCAAGTG
  Y
  ATGGCTAAGA GGACAGTGCC TAACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135376547	ENSMUSSNP3236786	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320812297	CHEV_3_79645444	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50644597					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79748829 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13278	CpG island 13278			1103 bp proximal
Gm64378	predicted gene, 64378			1243 bp upstream
Rr397727	regulatory region 397727			699 bp upstream
Rr578586	regulatory region 578586			within coordinates
Rr578587	regulatory region 578587			197 bp proximal
Rr578588	regulatory region 578588			1147 bp proximal
Rr578589	regulatory region 578589			1254 bp proximal
Tmem144	transmembrane protein 144			Intron
				Noncoding-Transcript-Variant
Tssr29591	transcription start site region 29591			1237 bp upstream
Tssr33748	transcription start site region 33748			1120 bp downstream
Tssr33749	transcription start site region 33749			1335 bp downstream
Tssr33750	transcription start site region 33750			1914 bp downstream