rs50644712 SNP Detail

Summary

• ID
  rs50644712
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:24793163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAA GGGAAAACCT GTGGTATGTC
  Y
  TTAGAAGAGG CAGGAACCAG GAGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss61262535	NES16880245	PERLEGEN	MM_PANEL2	f	SNP	C			T	T	C	C	C	T	T		C	T	C	C
ss146998920	ENSMUSSNP6925401	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss323275274	CHEV_10_24637071	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs50644712					SNP	C	C	T	T	T	C	C	C	T	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61262535	NES16880245	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24793163 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	Intron
Tssr92746	transcription start site region 92746	1628 bp downstream
Tssr92747	transcription start site region 92747	1538 bp downstream
Tssr97085	transcription start site region 97085	1772 bp upstream
Tssr97086	transcription start site region 97086	1710 bp upstream
Tssr97087	transcription start site region 97087	1684 bp upstream
Tssr97088	transcription start site region 97088	1624 bp upstream
Tssr97089	transcription start site region 97089	1609 bp upstream
Tssr97090	transcription start site region 97090	1578 bp upstream
Tssr97091	transcription start site region 97091	1183 bp upstream
Tssr97092	transcription start site region 97092	1164 bp upstream
Tssr97093	transcription start site region 97093	1137 bp upstream
Tssr97094	transcription start site region 97094	1126 bp upstream
Tssr97095	transcription start site region 97095	1109 bp upstream
Tssr97096	transcription start site region 97096	824 bp upstream
Tssr97097	transcription start site region 97097	577 bp upstream
Tssr97098	transcription start site region 97098	418 bp upstream
Tssr97099	transcription start site region 97099	682 bp downstream
Tssr97100	transcription start site region 97100	720 bp downstream