rs50645537 SNP Detail

Summary

• ID
  rs50645537
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104695273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAGTGAG TGTCTACGTA
  TGTTGTCTGC CTGGATTTGA GACAGCTTCA CTCCACAGCC TATGTTGGCC TGGAATTTGT
  GGTAACTCTG CCCCCTCGGG AGTGCTGAGA TGACAGGCAT GAACCACCCG GCCAGCTGCA
  CCTGCAGTAG ACTCCATATG ACATACATTT ATTCTGGGAA ATACTTGTTG AAACCTATGA
  Y
  GAGCAGAGTT TGGTTGAATG GTACAGAGGG CAGGTAGGAG GGGGAGCATG GCAGGCAGCA
  GGCAGCCAGC ACCTGCCTGG GTGCCTCACA GGCCTGCTTG TAAATTTGAC TGATTTAGTT
  TTTGTAGCCC AGGATGGCCT GGAATTAACT CATAGAGATC CATCTGCCTT TGCTTCTTGT
  GTGTCATCGT GGCTCACCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60431859	NES15936363	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T		C	T	T
ss135571332	ENSMUSSNP3684259	ENSEMBL	ENSEMBL_Sanger	f	SNP	C						C				T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50645537					SNP	C	C	C	C	C	T	C	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431859	NES15936363	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104695273 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13651	CpG island 13651	587 bp proximal
Gm66976	predicted gene, 66976	352 bp downstream
Ppm1j	protein phosphatase 1J	1939 bp downstream
Rhoc	ras homolog family member C	1077 bp upstream
Rr77009	regulatory region 77009	327 bp proximal
Tssr31056	transcription start site region 31056	615 bp upstream
Tssr31057	transcription start site region 31057	836 bp upstream
Tssr31058	transcription start site region 31058	885 bp upstream
Tssr31059	transcription start site region 31059	1069 bp upstream