rs50645562 SNP Detail

Summary

• ID
  rs50645562
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:169116393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTA GTCATTTCTC CATGTGAGGG
  A
  ACCAGGCTTT TGTAGTTAAT TGAGT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148281340	ENSMUSSNP4836043	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320612051	CHEV_2_169099973	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50645562					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169116393 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr117	DNA Segment, Chr 2, Derry C. Roopenian 117	1404 bp proximal
D2Mit343	DNA segment, Chr 2, Massachusetts Institute of Technology 343	1384 bp proximal
Rr60000	regulatory region 60000	794 bp distal