rs50646690 SNP Detail

Summary

• ID
  rs50646690
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84468025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGCGCCGCGC GCCCGCGTCT GGAACAAACG CAACATTCCT
  CCCCCCCCCC CCCCGCGCGC GGCTCCGACA CCCGCCCCCG CGGGGAGCTG GGTGGTGTGG
  Y
  TCAGGCGTCC TGGGACGGGG ACCAGGCACA TCGGACAGAG CTGGGTGGAG CTCCCACCCG
  AACGATGTCC TGGGCGACCC TCGCCTTTCC CATCAGCAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145361147	ENSMUSSNP2958995	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50646690					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84468025 () rs orientation: forward

Symbol	Name	Function Class
Adgre5	adhesion G protein-coupled receptor E5	213 bp upstream
Cpgi20655	CpG island 20655	within coordinates
Gm46046	predicted gene, 46046	within coordinates
Rr368559	regulatory region 368559	1258 bp downstream
Tssr2618	transcription start site region 2618	1283 bp upstream
Tssr2619	transcription start site region 2619	995 bp downstream
Tssr2620	transcription start site region 2620	99 bp downstream
Tssr2621	transcription start site region 2621	1159 bp upstream
Tssr78291	transcription start site region 78291	1040 bp downstream
Tssr78292	transcription start site region 78292	1018 bp downstream
Tssr78293	transcription start site region 78293	877 bp downstream
Tssr78294	transcription start site region 78294	822 bp downstream
Tssr78295	transcription start site region 78295	776 bp downstream
Tssr78296	transcription start site region 78296	757 bp downstream
Tssr78297	transcription start site region 78297	within coordinates
Tssr82049	transcription start site region 82049	1326 bp upstream
Tssr82050	transcription start site region 82050	1238 bp upstream
Tssr82051	transcription start site region 82051	964 bp upstream
Tssr82052	transcription start site region 82052	206 bp upstream