rs50647083 SNP Detail

Summary

• ID
  rs50647083
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51182965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTA CACTAATTCA TACTGATCAA
  W
  GGACTGACTT TAACAAGGAC CCAAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss135172555	ENSMUSSNP2986370	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320762236	CHEV_3_51079466	CHEVERUD	SCREENING_POP	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs50647083					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51182965 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930577N17Rik	RIKEN cDNA 4930577N17 gene			1215 bp upstream
Elf2	E74-like factor 2			Intron
				Noncoding-Transcript-Variant
Gm64767	predicted gene, 64767			720 bp upstream
Rr397655	regulatory region 397655			499 bp upstream
Rr576259	regulatory region 576259			230 bp proximal
Rr576260	regulatory region 576260			731 bp proximal
Rr576261	regulatory region 576261			1814 bp proximal
Rr576262	regulatory region 576262			1925 bp proximal
Tssr29048	transcription start site region 29048			713 bp upstream
Tssr29049	transcription start site region 29049			1303 bp upstream
Tssr33194	transcription start site region 33194			482 bp downstream
Tssr33195	transcription start site region 33195			1733 bp downstream
Tssr33196	transcription start site region 33196			1767 bp downstream
Tssr33197	transcription start site region 33197			1926 bp downstream