rs50647390 SNP Detail

Summary

• ID
  rs50647390
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26196953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACAAAGA AGAAAGAACA
  ATGACTCCAG GAACTCTCCA TGCGACAAAA CCCCAATCAT GTCTGCTATC GAGGAGGAGA
  GAGCCCTTTG GTGTGCTCAG GAGCCTCTGT CCTGGCTAAG GGCCACCTGA GGCTTGAGAG
  ATGATGACCC CTACCTTAAC CCCACTACAC ACACCATGAG CCACTTGACT ACCAGCTCTT
  R
  GTTGGCCTAC GGGGTCCTCT CACCTTGAGA AGCTGGCATC AGTATGGCTC TGCTTGTTTT
  GAGACAGTCT CATGTATCGT ACGATGGCCC AAAACACTAT GTAGACAACA ATGTTCTTCC
  ATTCCTGATC CTCCTGTGTA AGATTGTGTG GCTTACCACA TAGCTGTTCA TGTGTGCCTC
  TTGAAACCCA CCTTCTTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60255364	NES15700136	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50647390					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60255364	NES15700136	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26196953 () rs orientation: forward

Symbol	Name	Function Class
Capn15	calpain 15	within coordinates
Rr329923	regulatory region 329923	553 bp distal
Rr329924	regulatory region 329924	648 bp proximal
Rr334464	regulatory region 334464	153 bp distal
Tssr146884	transcription start site region 146884	1908 bp downstream
Tssr146885	transcription start site region 146885	1957 bp downstream