rs50648049 SNP Detail

Summary

• ID
  rs50648049
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156958866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCAGGAAC TTGCTATATA
  GACAAGGCTG GCCTTGAACT CACAGAGATC CACCTGTCTC TGCCTTCTGA GTGCTGGAAT
  TAAAGGGGTG CATCATCACG CCCTGTCACA AACAACTTTT ATTAGTCTTT AAAATGCACA
  ACGGGAGGAG TCTCACTGAA GCGCTCTCAG ATTCTCTCTT ACTGACCCCC CCGCTCTACA
  M
  CACCATTATA TACCAGTTTA TTATTCCATA AATACAATGA ATAACACTTT ATAAAATATA
  ATAATTCACA TTACCAAGGA GATTATTACC AGATCATATC GGTAGAATGA CTATCATTCT
  AAAATTTAGG GTTTTTTTCC CCCCATCAAC AGAACATTTG AAGTGATAAG CTGTTTGTTA
  GTGCTTCCAC CTTGTGGTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148092296	ENSMUSSNP2780761	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50648049					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156958866 () rs orientation: forward

Symbol	Name	Function Class
Rr568435	regulatory region 568435	1986 bp distal
Rr568436	regulatory region 568436	8 bp proximal
Rr568437	regulatory region 568437	181 bp proximal
Rr568438	regulatory region 568438	582 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron