rs50648520 SNP Detail

Summary

• ID
  rs50648520
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113393612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGACCGTGG TCCCTGTGCC
  CCAGACATCG AAGTACCAGT AGCACAGTCT CTGTTCTGCC TCTGTTCCTA TACTAAAACT
  CTCTCCACAT CCTGCCTTAG GCCACCTGAA CCCCACAGTC CCCAGATGCA GGACTCACCT
  GACCTGAGTG ACCTGAGCCC CCTGGTCCTA GACATCAGAG TAATTATAGA CCCAGTGAAG
  K
  AGCCCTTCAT CTGGGGCCAA CCAAACCCAT CCCAAAGTCC CTTGGCGTCC CCAGTGGCAT
  CCAAGCCTCA GAAACTCAGA TGTTTGGAGA GATCTCCACC TTAATTCAAC TGGATGGGCC
  CATCTGTAGG ATGGTAATCT TTCAGGCTAG CCTTGGCTAG CATAGTGAGA CCTGTGACAA
  GAGAAGAAGG AAACAGGAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss138742397	ENSMUSSNP2298453	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50648520					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113393612 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	536 bp downstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Ighj1	immunoglobulin heavy joining 1	159 bp upstream
Ighj2	immunoglobulin heavy joining 2	477 bp upstream
Ighj3	immunoglobulin heavy joining 3	860 bp upstream
Ighj4	immunoglobulin heavy joining 4	1425 bp upstream
Tssr115504	transcription start site region 115504	235 bp upstream
Tssr118005	transcription start site region 118005	1445 bp upstream
Tssr118006	transcription start site region 118006	1414 bp upstream
Tssr118007	transcription start site region 118007	1368 bp upstream
Tssr118008	transcription start site region 118008	1341 bp upstream
Tssr118009	transcription start site region 118009	1330 bp upstream
Tssr118010	transcription start site region 118010	1192 bp upstream
Tssr118011	transcription start site region 118011	1094 bp upstream
Tssr118012	transcription start site region 118012	859 bp upstream
Tssr118013	transcription start site region 118013	844 bp upstream
Tssr118014	transcription start site region 118014	740 bp upstream
Tssr118015	transcription start site region 118015	644 bp upstream
Tssr118016	transcription start site region 118016	490 bp upstream
Tssr118017	transcription start site region 118017	150 bp upstream
Tssr118018	transcription start site region 118018	384 bp downstream
Tssr118019	transcription start site region 118019	401 bp downstream
Tssr118020	transcription start site region 118020	457 bp downstream
Tssr118021	transcription start site region 118021	597 bp downstream
Tssr118022	transcription start site region 118022	629 bp downstream
Tssr118023	transcription start site region 118023	794 bp downstream