rs50649824 SNP Detail

Summary

• ID
  rs50649824
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:3673366 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TCATAGCAAA GTCAGAGGTG
  AGATCATACT CACAAGTTCT GGGGATTAGG TCATGGGCTC TTCAGAGCCA TTTGTAGATA
  TCTACCACAG TGCTCAAAGT GACCTTGACA ATGTTACCTA CCACCCTCTT TCCATTTGAG
  TCTCCTCATC CATCATAGTT TGATAGACAA TTATGTTTTA AGTTAAATAA GGCAGCCTTT
  S
  TGTCTAGATC ATAACAAACA CACCTCAAAT GTGAAGGCAC ACTTCCTGCC TTCTCCCCTT
  GGGTTTTGTC TACTGGGAAC CCAGTTAGTA CTTCCAGCAC CAGCACAAGT CTATTAAAAA
  AGGGGCAAAT CCTGCCTTTT GCATGGCTCA GGCTGTCTCA GAGATCCTTG CTACTATATC
  ACTTCTCTGT CCTTGCTGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52125809	NES15247325	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50649824					SNP	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52125809	NES15247325	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:3673366 () rs orientation: reverse

Symbol	Name	Function Class
A330032P22Rik	RIKEN cDNA A330032P22 gene	within coordinates
Gm30164	predicted gene, 30164	within coordinates
Gm56946	predicted gene, 56946	within coordinates
Rr219187	regulatory region 219187	1766 bp distal
Rr227319	regulatory region 227319	within coordinates