rs50650282 SNP Detail

Summary

• ID
  rs50650282
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:165315930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCACATT CCCGCTAGCA
  GCTCATGGGG GCCCAGCTTC TCCACATCCT CCGTGGACTG CTGAGCAGTG ATGGATCAGC
  CGGACTCTTC TGTTTCCCAG AGATGCCTGG AAGGAACACA CGGCCTTGGC CATGCAAAGC
  AGAAGGCACA AGGCCTGACT CTGCTTTCCG CCCTGAGTGG GTCCTCCACC CTCCTTGGGA
  K
  TGCGACATGT TTCCCCACTG GCTACTGTCA ATGGGACCTT GTCCTGGCTC CTGGGGCCTG
  AGTGGTTTCT GTGGAGAAAG GGACTTGTTG GAAAGTTTCT TGGTTTTTGT CGTTTGGAGG
  AGGGGGCAGG GGGGGGTTGG TTCAGAACAT TGCATACACA CAGCTTATAA TCTATGGGCA
  CTGCCATCTT ACCAGGTCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148240390	ENSMUSSNP2533176	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50650282					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165315930 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12708	CpG island 12708	331 bp distal
Rr569926	regulatory region 569926	1737 bp distal
Rr569927	regulatory region 569927	889 bp distal
Rr569928	regulatory region 569928	546 bp distal
Slc13a3	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	813 bp upstream
Tssr27627	transcription start site region 27627	808 bp upstream