rs50653516 SNP Detail

Summary

• ID
  rs50653516
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:54759499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACTGGGC TGGCACCGGG
  TGCATTGAAC CGAAAAGTTT CTCCCAGAGC TGATTTTGTG AGCTGCGTGA TACAAGAGTA
  CTCTTCCTGC GTAGGAGGAG GGAGCTGAGG CTGGGAAAGG CTTGAGTGCC AGGCGCGCAC
  AGCAGAGCCT TGTTCTCTCA GGACTGAGTA AAGCATCCCG CCGCCCTATC TGTGTGATGA
  K
  CCCCTGAAAT CAGGGACTGT TCCTCTTTCT CCCTGTCTGG TGACATTGAT GTTCCTTAAG
  GCAACTAACT GGCTGATTGT TTTGTCTTTC AATTTGAGCT CTTTCTCTAG TTCTTAGAGC
  AGAGGGTCAG TTTGTCCCAT TATTGGTTAG GTTCCCGTTG ATTACTCAGT ACAGTACAGG
  TGGAGCCTGC TTTTTTCTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61808430	NES17739252	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	G	G	G	G	G	T	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50653516					SNP	G	G	T	G	G	G	G	G	G	T	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61808430	NES17739252	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:54759499 () rs orientation: forward

Symbol	Name	Function Class
Cltb	clathrin light chain B	342 bp upstream
Cpgi5644	CpG island 5644	within coordinates
Rr388462	regulatory region 388462	1917 bp downstream
Rr480259	regulatory region 480259	1000 bp distal
Rr480260	regulatory region 480260	within coordinates
Rr480261	regulatory region 480261	1614 bp proximal
Tssr122620	transcription start site region 122620	389 bp upstream
Tssr122621	transcription start site region 122621	360 bp upstream
Tssr122622	transcription start site region 122622	299 bp upstream
Tssr122623	transcription start site region 122623	146 bp upstream