rs50653601 SNP Detail

Summary

• ID
  rs50653601
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:11987241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTGAAGGA AAGTGAAGGC AGTCACAAGA GGAATGGCCC
  CATGTTCCCA AGGCAGACAG TCCCCAATTA GGGGCGCTGA AGAGAGCCTT GTCTGTCTCT
  C
  ATGTCCATTA TTCTTCTACC CAGGCCCTTC TTCCAGCCCG AAGGTCATCA GCACTGATGC
  CTGGGATGTG CATTATGCTT AGAGATTGGT AGGGGAGGG                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145165292	ENSMUSSNP157616	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325300444	CHEV_17_11961220	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50653601					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:11987241 () rs orientation: forward

Symbol	Name	Function Class
Prkn	parkin RBR E3 ubiquitin protein ligase	within coordinates
Rr334163	regulatory region 334163	1641 bp distal
Rr334164	regulatory region 334164	560 bp proximal
Rr343776	regulatory region 343776	1228 bp proximal